Mechanics of collective unfolding

Mechanically induced unfolding of passive crosslinkers is a fundamental biological phenomenon encountered across the scales from individual macro-molecules to cytoskeletal actin networks. In this paper we study a conceptual model of athermal load-induced unfolding and use a minimalistic setting allowing one to emphasize the role of long-range interactions while maintaining full analytical transparency. Our model can be viewed as a description of a parallel bundle of N bistable units confined between two shared rigid backbones that are loaded through a series spring. We show that the ground states in this model correspond to synchronized, single phase configurations where all individual units are either folded or unfolded. We then study the fine structure of the wiggly energy landscape along the reaction coordinate linking the two coherent states and describing the optimal mechanism of cooperative unfolding. Quite remarkably, our study shows the fundamental difference in the size and structure of the folding-unfolding energy barriers in the hard (fixed displacements) and soft (fixed forces) loading devices which persists in the continuum limit. We argue that both, the synchronization and the non-equivalence of the mechanical responses in hard and soft devices, have their origin in the dominance of long-range interactions. We then apply our minimal model to skeletal muscles where the power-stroke in acto-myosin crossbridges can be interpreted as passive folding. A quantitative analysis of the muscle model shows that the relative rigidity of myosin backbone provides the long-range interaction mechanism allowing the system to effectively synchronize the power-stroke in individual crossbridges even in the presence of thermal fluctuations. In view of the prototypical nature of the proposed model, our general conclusions pertain to a variety of other biological systems where elastic interactions are mediated by effective backbones

Action minimizing fronts in general FPU-type chains

We study atomic chains with nonlinear nearest neighbour interactions and prove the existence of fronts (heteroclinic travelling waves with constant asymptotic states). Generalizing recent results of Herrmann and Rademacher we allow for non-convex interaction potentials and find fronts with non-monotone profile. These fronts minimize an action integral and can only exists if the asymptotic states fulfil the macroscopic constraints and if the interaction potential satisfies a geometric graph condition. Finally, we illustrate our findings by numerical simulations.Comment: 19 pages, several figure

Subsonic phase transition waves in bistable lattice models with small spinodal region

Phase transitions waves in atomic chains with double-well potential play a fundamental role in materials science, but very little is known about their mathematical properties. In particular, the only available results about waves with large amplitudes concern chains with piecewise-quadratic pair potential. In this paper we consider perturbations of a bi-quadratic potential and prove that the corresponding three-parameter family of waves persists as long as the perturbation is small and localised with respect to the strain variable. As a standard Lyapunov-Schmidt reduction cannot be used due to the presence of an essential spectrum, we characterise the perturbation of the wave as a fixed point of a nonlinear and nonlocal operator and show that this operator is contractive in a small ball in a suitable function space. Moreover, we derive a uniqueness result for phase transition waves with certain properties and discuss the kinetic relation.Comment: revised version with extended introduction, improved perturbation method, and novel uniqueness result; 20 pages, 5 figure

Active gel segment behaving as an active particle

Quantifying the outcomes of cells collisions is a crucial step in building the foundations of a kinetic theory of living matter. Here, we develop a mechanical theory of such collisions by first representing individual cells as extended objects with internal activity and then reducing this description to a model of size-less active particles characterized by their position and polarity. We show that, in the presence of an applied force, a cell can either be dragged along or self-propel against the force, depending on the polarity of the cell. The co-existence of these regimes offers a self-consistent mechanical explanation for cell re-polarization upon contact. We rationalize the experimentally observed collision scenarios within the extended and particle models and link the various outcomes with measurable biological parameters

Frictionless Motion of Lattice Defects

Energy dissipation by fast crystalline defects takes place mainly through the resonant interaction of their cores with periodic lattice. We show that the resultant effective friction can be reduced to zero by appropriately tuned acoustic sources located on the boundary of the body. To illustrate the general idea, we consider three prototypical models describing the main types of strongly discrete defects: dislocations, cracks and domain walls. The obtained control protocols, ensuring dissipation-free mobility of topological defects, can be also used in the design of meta-material systems aimed at transmitting mechanical information

Optimality of contraction-driven crawling

We study a model of cell motility where the condition of optimal trade-off between performance and metabolic cost can be made precise. In this model a steadily crawling fragment is represented by a layer of active gel placed on a frictional surface and driven by contraction only. We find analytically the distribution of contractile elements (pullers) ensuring that the efficiency of self-propulsion is maximal. We then show that natural assumptions about advection and diffusion of pullers produce a distribution that is remarkably close to the optimal one and is qualitatively similar to the one observed in experiments on fish keratocytes

Homogeneous nucleation of dislocations as a pattern formation phenomenon

Dislocation nucleation in homogeneous crystals initially unfolds as a linear symmetry-breaking elastic instability. In the absence of explicit nucleation centers, such instability develops simultaneously all over the crystal and due to the dominance of long range elastic interactions it advances into the nonlinear stage as a collective phenomenon through pattern formation. In this paper we use a novel mesoscopic tensorial model (MTM) of crystal plasticity to study the delicate role of crystallographic symmetry in the development of the dislocation nucleation patterns in defect free crystals loaded in a hard device. The model is formulated in 2D and we systematically compare lattices with square and triangular symmetry. To avoid the prevalence of the conventional plastic mechanisms, we consider the loading paths represented by pure shears applied on the boundary of the otherwise unloaded body. These loading protocols can be qualified as exploiting the 'softest' and the 'hardest' directions and we show that the associated dislocation patterns are strikingly different

Beyond Kinetic Relations

We introduce the concept of kinetic equations representing a natural extension of the more conventional notion of a kinetic relation. Algebraic kinetic relations, widely used to model dynamics of dislocations, cracks and phase boundaries, link the instantaneous value of the velocity of a defect with an instantaneous value of the driving force. The new approach generalizes kinetic relations by implying a relation between the velocity and the driving force which is nonlocal in time. To make this relations explicit one needs to integrate the system of kinetic equations. We illustrate the difference between kinetic relation and kinetic equations by working out in full detail a prototypical model of an overdamped defect in a one-dimensional discrete lattice. We show that the minimal nonlocal kinetic description containing now an internal time scale is furnished by a system of two ordinary differential equations coupling the spatial location of defect with another internal parameter that describes configuration of the core region.Comment: Revised version, 33 pages, 9 figure

Boiling Crisis as a Critical Phenomenon

We present the first experimental study of intermittency and avalanche distribution during a boiling crisis. To understand the emergence of power law statistics we propose a simple spin model capturing the measured critical exponent. The model suggests that behind the critical heat flux is a percolation phenomenon involving drying-rewetting competition close to the hot surface